So if the cutscene is immersion breaking, then the loading screen immediately afterwards must really trash the game for ya'?
My usual MO? I hit the transition, get up and get more coffee, a Pepsi, or a sammich, yes, I have to get my own, my cat's too lazy to do it for me, and come back to find "Hey, I'm in a new/different place". I don't think I've watched more than the first departure scene for each class to get a look at the ship when it's not in a hangar, after that, I don't even pay attention to them, even if I'm not AFK during the transition.
For me, this is the chance to get up, stretch my legs, maybe a trip to the little boy's room, feed the cat, etc. It's not going to break the game if it never gets fixed, since I don't pay attention to it now, I'm surely not going to fuss about it later.