Well, can confirm, GSF still has the same problem. And for some weird reason the crafting goal stopped counting the prefabs after 16 for me. May be related to traveling to Odessen, as weird as it sounds, it's the only thing that changed from when it still worked... Will experiment more later when I have the time to play again.
Did the Republic side last night, looking for a strongbox helps if you're missing them while they're waiting for a respawn, it's how I found the second one.