You get it as a second bonus mission to kill 40 after you have done the first 60
as for the first 6 circled one they are still there but the awesomenes of the programming does so that sometimes you take longer to load in but the mission have started so they have been there and gone again
can you give a little more info, rep or emp side? and since normal ships don't have bridges what did you shoot at?, i just did emp side a few times destroyed everything and no bonus
ehhmmm a 30 sec CD do not stop people with cash to max affection with their unused companions it just takes longer (not alot longer just longer) 30 sec CD is just annoying