My Inquisitor was pretty heartbroken by the whole thing, outside of Talos, he was probably the only other person my Inquisitor had trusted enough to reveal information about his past and this was like a blow to the gut for him. I've played through it twice now, both light-sided characters, one romance and one not and it really does feel like a ploy, albeit a terrible one.
Also I had terrible fps issues on the train along with a bit of weird motion sickness from the movement combined with the whooshing feeling on screen. That first boss fight was a nightmare because of the lag, my abilities not going off, etc. The latter part off the flashpoint was fine, but I was only getting like 38-40 fps on the train part.