Thanks, then it would seem I am being a little thick then...
The convo I was having (Sith Assassin), was with some Major/general on Quesh, storyarc, to which I felt sure the choice of shock him, would most certainly be disagreeable with my companion Ashara, I did also try with different companions, such as Khem, who would most likely be very agreeable to the shock him choice, but that didn't work, nor any other choices...
Any hows, enough rambling... I did take a light side jedi to ilum, and made some convo with the pilot, and presto, it brung up the convo alignment thing... So, again, what you have said, would certainly seem reasonable.
So I will call this closed/solved, filed under bin/trash... but will keep an eye on things IG.
Thanks to you all who took the time to help and look into this for me, it has been much appreciated
Take care, and thanks:)