1) I've been using the seer tree pretty much exclusively on my sage, and haven't had too many significant problems so far. I DID do the more force power points which is smart for any build you'd do imho. Maybe not as efficient as other builds, but it works for me. (Level 46.5 atm)
2) As for my companions, i used Qyzen pretty much till i got Nadia and have been using her ever since except when one of the other companions would be a better choice for a fight.
I've found that with my build, as long as i get agro on myself and keep myself healed, i can take out some of the harder mobs fairly easy. (Did that with Stark, Got myself agro and Nadia whittled him down)
3) As for the saber attacks, i still keep them up just in case. Been a few times on a long fight where a couple of whacks with the saber would have enabled me to win. Granted, it's very rare that happens, but it's still DPS so unless you need the room why not keep them up?
Just my .02